Gene Finding and Gene Identification Resources
Owner: Pamela Shaw

Description: Servers and tools that scan a sequence for potential gene features
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Viewing items tagged: genome x
Item Description More Info
AGenDA AGenDA is a gene-prediction tool that is based on cross-species sequence comparison. The software tools CHAOS and DIALIGN are used to align a pair of syntenic genomic sequences, e.g. from human and mouse. AGenDA searches for conserved splice sites and start/stop codons at the boundaries of identified sequence homologies in order to identify potential exons. Tags Save
Augustus: gene prediction Univ. of Gottingen. AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. Tags Save
BDGP: Neural Network Promoter Prediction Lawrence Berkeley National Laboratory. Berkeley Drosophila Genome Project. Uses neural network programming techniques to predict promoters from a submitted sequence Tags Save
CPC - Coding Potential Calculator Peking University. CPC (Coding Potential Calculator) distinguishes protein-coding from non-coding RNAs based on the sequence features of the input transcripts. Tags Save
EasyGene 1.2 Server BINF, Copenhagen. EasyGene 1.2 server uses HMM to produce a list of predicted genes given a sequence of prokaryotic DNA. Tags Save
GENSCAN Web Server at MIT MIT. Scans a DNA sequence for promoters and predicts gene make-up Tags Save
HomoloGene NCBI. HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. Tags Save