Gene Finding and Gene Identification Resources
Owner: Pamela Shaw

Description: Servers and tools that scan a sequence for potential gene features
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Viewing items tagged: genes x
Item Description More Info
AGenDA AGenDA is a gene-prediction tool that is based on cross-species sequence comparison. The software tools CHAOS and DIALIGN are used to align a pair of syntenic genomic sequences, e.g. from human and mouse. AGenDA searches for conserved splice sites and start/stop codons at the boundaries of identified sequence homologies in order to identify potential exons. Tags Save
Augustus: gene prediction Univ. of Gottingen. AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. Tags Save
BDGP: Neural Network Promoter Prediction Lawrence Berkeley National Laboratory. Berkeley Drosophila Genome Project. Uses neural network programming techniques to predict promoters from a submitted sequence Tags Save
CPC - Coding Potential Calculator Peking University. CPC (Coding Potential Calculator) distinguishes protein-coding from non-coding RNAs based on the sequence features of the input transcripts. Tags Save
EasyGene 1.2 Server BINF, Copenhagen. EasyGene 1.2 server uses HMM to produce a list of predicted genes given a sequence of prokaryotic DNA. Tags Save
FrameD FrameD locates genes and frameshifts in procaryotic sequences and matured eukaryotic sequences (to predict and correct frameshifts in EST, EST clusters and cDNAs). Tags Save
Gene Finder Cold Spring Harbor. This page contains software tools designed to predict putative internal protein coding exons in genomic DNA sequences for humans, arabidopsis, yeast and mice. Tags Save
GENSCAN Web Server at MIT MIT. Scans a DNA sequence for promoters and predicts gene make-up Tags Save
HomoloGene NCBI. HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes. Tags Save
ORF Finder NCBI. The ORF Finder (Open Reading Frame Finder) is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. Tags Save